Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
4
WGBS
3
ATAC-seq
total RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
36
DNA binding
4
DNA methylation
3
DNA accessibility
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
40
August, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
October, 2019
Available data
bam
44
fastq
30
bigWig
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
4
tsv
3
bed broadPeak
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
45
Homo sapiens
Biosample type
45
tissue
1
in vitro differentiated cells
Organ
188
pancreas
177
heart
157
kidney
146
epithelium
89
bone element
83
connective tissue
78
liver
47
blood vessel
47
vasculature
46
adipose tissue
37
artery
34
eye
34
musculature of body
29
brain
20
lung
9
blood
9
bodily fluid
5
gonad
5
limb
5
ovary
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
46
AMP
Genome assembly (visualization)
4
hg19
Lab
46
AMP-T2D consortium
files.file_type!
bam
bed bedMethyl
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
46 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
WGBS
ATAC-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
1
3
1
subcutaneous adipose tissue
1
in vitro differentiated cells
white fat cell
1
Download