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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
2
ATAC-seq
2
Capture-C
2
Hi-C
Assay category
14
DNA binding
2
3D chromatin structure
2
DNA accessibility
Target of assay
11
transcription factor
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
45
February, 2023
40
May, 2021
21
May, 2022
20
August, 2017
20
August, 2021
16
March, 2020
10
October, 2019
5
February, 2021
4
July, 2019
3
January, 2018
3
March, 2019
3
October, 2022
2
November, 2019
1
April, 2019
1
May, 2023
1
November, 2017
1
October, 2017
Available data
46
bigWig
41
bed narrowPeak
bam
15
tagAlign
15
tsv
5
bed bed3+
2
hic
1
bedpe bed3+
Organism
20
Homo sapiens
Biosample type
15
cell line
4
in vitro differentiated cells
1
tissue
Organ
15
liver
4
connective tissue
1
kidney
Project
20
AMP
Genome assembly (visualization)
64
GRCh38
20
hg19
Lab
15
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
files.file_type!
bam
bed bedMethyl
BIOSAMPLE
ASSAY
20 results
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Clear Filters
ChIP-seq
ATAC-seq
Capture-C
Hi-C
cell line
HepG2
14
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
tissue
kidney
1
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