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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ATAC-seq
42
ChIP-seq
1
Hi-C
1
total RNA-seq
Assay category
113
DNA accessibility
42
DNA binding
1
3D chromatin structure
1
Transcription
Target of assay
37
histone
37
histone modification
20
broad histone mark
17
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
64
August, 2021
40
May, 2024
35
February, 2023
12
May, 2023
3
October, 2019
2
March, 2019
1
October, 2017
Available data
bam
2411
bigWig
1371
bed narrowPeak
1148
tsv
893
bigBed narrowPeak
722
fastq
237
bed broadPeak
228
bed bed3+
222
bigBed broadPeak
148
tagAlign
64
xls
bed bedMethyl
17
bigBed bedMethyl
1
bed bed3
1
hdf5
1
tagAlign bed3+
Organism
157
Homo sapiens
Biosample type
156
tissue
primary cell
1
cell line
Organ
75
heart
75
kidney
35
artery
35
blood vessel
35
vasculature
4
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
157
AMP
Genome assembly (visualization)
157
GRCh38
152
hg19
5
hg18
Lab
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
39
AMP-T2D consortium
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
files.file_type!
bam
bed bedMethyl
biosample_type!
primary cell
BIOSAMPLE
ASSAY
157 results
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ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
tissue
kidney
75
left cardiac atrium
40
coronary artery
35
islet of Langerhans
3
adipose tissue
1
+ See 2 more…
cell line
Panc1
1
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