Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
41
ChIP-seq
35
ATAC-seq
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
96
Transcription
41
DNA binding
35
DNA accessibility
4
DNA methylation
3D chromatin structure
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
4
July, 2019
3
February, 2020
3
March, 2020
1
April, 2019
Available data
224
bigWig
bam
191
bed narrowPeak
168
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
Organism
179
Homo sapiens
Biosample type
178
tissue
1
primary cell
Organ
248
pancreas
209
kidney
199
epithelium
179
heart
106
liver
93
bone element
86
connective tissue
54
eye
49
adipose tissue
46
vasculature
45
blood vessel
40
brain
39
artery
33
musculature of body
20
lung
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
4
limb
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
179
AMP
Genome assembly (visualization)
75
GRCh38
3
hg19
Lab
139
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
files.file_type!
bam
bed bedgraph
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
179 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
left cardiac atrium
18
40
coronary artery
35
1
heart left ventricle
18
1
1
1
2
right cardiac atrium
18
1
heart right ventricle
17
1
+ See 10 more…
primary cell
cardiac fibroblast
1
See all biosamples
Download