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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
305
ATAC-seq
84
snATAC-seq
3
DNase-seq
Assay category
510
Transcription
392
DNA accessibility
184
DNA binding
79
DNA methylation
29
3D chromatin structure
1
DNA sequencing
Date released
102
February, 2023
70
August, 2021
61
May, 2022
55
May, 2020
31
February, 2021
16
January, 2021
16
May, 2021
15
October, 2019
11
May, 2023
10
April, 2020
3
March, 2019
1
August, 2017
1
August, 2022
Available data
492
bed narrowPeak
bam
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
391
Homo sapiens
Biosample type
199
tissue
164
primary cell
16
cell line
13
in vitro differentiated cells
Organ
83
kidney
83
pancreas
69
epithelium
35
artery
35
blood vessel
35
heart
35
vasculature
28
eye
14
connective tissue
10
lung
8
blood
8
bodily fluid
4
bone element
4
skeleton
2
brain
1
adipose tissue
1
liver
1
musculature of body
1
pituitary gland
1
skin of body
Project
266
AMP
87
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
112
GRCh38
49
hg19
Lab
182
AMP-T2D consortium
87
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
29
audit script error
24
inconsistent ontology term
files.file_type!
bam
bigWig
BIOSAMPLE
ASSAY
392 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
tissue
kidney
75
6
coronary artery
35
islet of Langerhans
27
7
retina
15
pigmented layer of retina
12
+ See 10 more…
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
22
pancreatic beta cell
13
+ See 9 more…
cell line
EndoC_BH1
16
in vitro differentiated cells
adipocyte
5
chondrocyte
5
immature adipocyte
2
preadipocyte
1
See all biosamples
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