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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
13
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
52
DNA binding
13
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
19
broad histone mark
14
narrow histone mark
12
transcription factor
7
control
5
RNA binding protein
Date released
42
May, 2021
14
August, 2017
13
February, 2023
6
March, 2020
4
February, 2021
3
August, 2021
2
December, 2019
2
October, 2019
1
August, 2018
Available data
bam
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
87
Homo sapiens
Biosample type
782
tissue
430
primary cell
87
in vitro differentiated cells
62
cell line
6
stem cell
Organ
34
connective tissue
1
adipose tissue
Project
87
AMP
Genome assembly (visualization)
21
hg19
Lab
43
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
2
audit script error
files.file_type!
bam
bigWig
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
37
5
1
adipocyte
14
5
1
1
cardiomyocytes (cardiac muscle cell)
2
2
2
chondrocyte
5
immature adipocyte
2
2
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