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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
6
Hi-C
5
RRBS
2
total RNA-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
9
DNA binding
6
3D chromatin structure
5
DNA methylation
3
Transcription
1
DNA accessibility
Target of assay
6
histone
6
histone modification
4
broad histone mark
3
control
2
narrow histone mark
Date released
13
August, 2017
5
July, 2019
3
March, 2020
2
February, 2020
2
May, 2022
Available data
bigWig
60
bed narrowPeak
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
25
Homo sapiens
Biosample type
24
tissue
1
primary cell
Organ
235
pancreas
210
kidney
193
epithelium
141
heart
93
bone element
83
connective tissue
75
liver
54
eye
49
vasculature
48
blood vessel
46
adipose tissue
39
artery
39
brain
25
musculature of body
20
lung
8
blood
8
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
25
AMP
Genome assembly (visualization)
6
hg19
Lab
25
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
bigWig
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
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