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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
28
ChIP-seq
4
WGBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
31
Transcription
28
DNA binding
4
DNA methylation
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
7
control
1
transcription factor
Date released
27
August, 2017
20
May, 2022
16
August, 2021
1
December, 2018
1
February, 2020
1
February, 2021
1
July, 2019
1
March, 2020
1
May, 2020
1
November, 2017
Available data
bam
75
fastq
44
tagAlign
12
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
70
Homo sapiens
Biosample type
51
tissue
19
cell line
Organ
234
pancreas
205
kidney
179
epithelium
176
heart
89
bone element
70
liver
65
connective tissue
45
blood vessel
45
vasculature
44
adipose tissue
39
artery
34
brain
26
eye
20
lung
19
musculature of body
8
blood
8
bodily fluid
8
limb
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
70
AMP
Genome assembly (visualization)
hg19
Lab
34
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
files.file_type!
bam
hic
assembly!
hg19
BIOSAMPLE
ASSAY
70 results
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total RNA-seq
ChIP-seq
WGBS
STARR-seq
pCHi-C
DNase-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
20
23
3
1
1
right lobe of liver
1
1
1
cell line
HepG2
9
5
2
1
1
1
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