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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
total RNA-seq
4
ChIP-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
12
Transcription
4
DNA binding
3
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
12
February, 2020
5
July, 2019
3
October, 2019
2
March, 2020
2
November, 2017
1
February, 2023
Available data
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
25
Homo sapiens
Biosample type
21
tissue
4
primary cell
Organ
248
pancreas
210
kidney
207
epithelium
142
heart
93
bone element
90
liver
69
connective tissue
54
eye
51
vasculature
50
blood vessel
41
adipose tissue
39
artery
25
brain
24
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
25
AMP
Genome assembly (visualization)
8
hg19
2
GRCh38
Lab
25
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bam
tagAlign
BIOSAMPLE
ASSAY
25 results
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total RNA-seq
ChIP-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
tissue
Ammon's horn
1
1
brain
1
1
amygdala
1
anterior cingulate cortex
1
caudate nucleus
1
+ See 14 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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