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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ATAC-seq
51
ChIP-seq
9
total RNA-seq
4
WGBS
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
55
DNA accessibility
51
DNA binding
11
Transcription
5
DNA methylation
1
3D chromatin structure
Target of assay
44
histone
44
histone modification
28
broad histone mark
16
narrow histone mark
7
control
Date released
54
August, 2017
49
February, 2023
7
August, 2021
4
February, 2020
4
February, 2021
4
October, 2019
2
July, 2019
2
March, 2020
1
August, 2018
1
January, 2018
1
May, 2021
1
May, 2023
Available data
bam
655
bigWig
536
tsv
149
bed narrowPeak
101
fastq
53
bigBed narrowPeak
31
bed bed3+
28
tagAlign
14
bed broadPeak
13
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
129
Homo sapiens
Biosample type
88
tissue
38
in vitro differentiated cells
3
primary cell
1
stem cell
Organ
257
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
129
AMP
1
T1D
Genome assembly (visualization)
36
GRCh38
26
hg19
Lab
125
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
files.file_type!
bam
tar
BIOSAMPLE
ASSAY
130 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
WGBS
pCHi-C
Capture-C
single cell RNA-seq
Hi-C
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
36
3
coronary artery
35
1
adipose tissue
3
1
1
1
pulmonary artery
2
subcutaneous adipose tissue
1
1
+ See 3 more…
in vitro differentiated cells
adipocyte
8
14
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 1 more…
primary cell
adult endothelial progenitor cell
1
brain pericyte
1
cardiac fibroblast
1
stem cell
mesenchymal stem cell
1
See all biosamples
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