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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
20
ATAC-seq
20
total RNA-seq
4
Hi-C
4
WGBS
2
RRBS
2
STARR-seq
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
42
DNA binding
21
DNA accessibility
21
Transcription
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
23
histone
23
histone modification
13
broad histone mark
12
transcription factor
10
narrow histone mark
7
control
1
RNA binding protein
Date released
40
May, 2022
28
August, 2017
22
August, 2021
3
July, 2019
2
February, 2021
1
December, 2018
1
March, 2020
1
November, 2017
Available data
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
98
Homo sapiens
Biosample type
71
tissue
25
cell line
2
primary cell
Organ
246
pancreas
198
kidney
197
epithelium
98
liver
93
bone element
87
connective tissue
49
eye
46
adipose tissue
44
heart
41
vasculature
40
blood vessel
36
musculature of body
35
artery
29
brain
19
lung
9
blood
9
bodily fluid
8
skeleton
5
limb
4
gonad
4
ovary
2
vein
1
bone marrow
1
embryo
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
98
AMP
Genome assembly (visualization)
40
hg19
Lab
40
Karen Mohlke, UNC
36
AMP-T2D consortium
22
Bing Ren, UCSD
files.file_type!
bam
tsv
BIOSAMPLE
ASSAY
98 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
RRBS
STARR-seq
DNase-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
23
20
20
1
3
1
1
right lobe of liver
1
1
cell line
HepG2
19
2
2
1
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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