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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ATAC-seq
4
Hi-C
2
Capture-C
2
total RNA-seq
1
snATAC-seq
Assay category
5
DNA accessibility
4
3D chromatin structure
2
Transcription
Date released
4
February, 2023
4
July, 2019
2
August, 2021
2
May, 2021
1
May, 2022
Available data
bam
2607
bigWig
1481
tsv
1373
bed narrowPeak
931
fastq
687
bigBed narrowPeak
378
tagAlign
270
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
13
Homo sapiens
Biosample type
6
in vitro differentiated cells
6
primary cell
cell line
1
tissue
Organ
7
connective tissue
3
brain
2
blood vessel
2
epithelium
2
vasculature
1
liver
1
musculature of body
Project
13
AMP
Genome assembly (visualization)
13
hg19
Lab
9
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
bam
biosample_type!
cell line
BIOSAMPLE
ASSAY
13 results
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Clear Filters
ATAC-seq
Hi-C
Capture-C
total RNA-seq
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
tissue
skeletal muscle tissue
1
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