Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
19
RRBS
1
ATAC-seq
Assay category
21
DNA binding
19
DNA methylation
1
DNA accessibility
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
Date released
24
August, 2017
15
July, 2019
1
November, 2017
1
October, 2017
Available data
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
41
Homo sapiens
Biosample type
31
tissue
10
primary cell
Organ
16
musculature of body
9
pancreas
6
epithelium
4
kidney
3
brain
2
connective tissue
2
heart
2
liver
1
adipose tissue
1
eye
1
pericardium
1
vasculature
Project
41
AMP
Genome assembly (visualization)
41
hg19
1
GRCh38
Lab
40
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
41 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
RRBS
ATAC-seq
tissue
skeletal muscle tissue
13
2
islet of Langerhans
6
1
1
brain
1
cingulate gyrus
1
heart left ventricle
1
+ See 5 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
See all biosamples
Download