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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
66
ChIP-seq
Assay category
116
DNA accessibility
66
DNA binding
Target of assay
55
histone
55
histone modification
33
broad histone mark
22
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
80
August, 2021
30
February, 2023
30
May, 2021
20
August, 2017
20
May, 2022
1
April, 2019
1
November, 2017
Available data
bam
2974
bigWig
1644
bed narrowPeak
1532
tsv
1352
fastq
959
bigBed narrowPeak
392
tagAlign
305
bed broadPeak
268
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
182
Homo sapiens
Biosample type
134
tissue
30
primary cell
14
cell line
4
in vitro differentiated cells
Organ
64
kidney
36
heart
35
artery
35
blood vessel
vasculature
34
liver
27
eye
13
musculature of body
12
epithelium
6
pancreas
4
connective tissue
2
adipose tissue
1
brain
Project
182
AMP
Genome assembly (visualization)
118
hg19
64
GRCh38
Lab
64
Katalin Susztak, Upenn
50
AMP-T2D consortium
30
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
bam
organ_slims!
vasculature
BIOSAMPLE
ASSAY
182 results
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Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney
64
liver
20
retina
15
skeletal muscle tissue
13
pigmented layer of retina
12
+ See 5 more…
primary cell
CD8-positive, alpha-beta T cell
30
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
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