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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
19
RRBS
Assay category
84
DNA binding
19
DNA methylation
Target of assay
74
histone
74
histone modification
44
broad histone mark
30
narrow histone mark
10
control
Date released
70
August, 2017
15
July, 2019
11
November, 2017
7
October, 2017
Available data
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
103
Homo sapiens
Biosample type
79
tissue
14
in vitro differentiated cells
10
primary cell
Organ
23
connective tissue
22
liver
20
brain
18
musculature of body
11
pancreas
8
adipose tissue
6
epithelium
4
kidney
2
heart
1
eye
1
pericardium
1
vasculature
Project
103
AMP
Genome assembly (visualization)
40
hg19
Lab
103
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bam
BIOSAMPLE
ASSAY
103 results
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Clear Filters
ChIP-seq
RRBS
tissue
liver
20
1
skeletal muscle tissue
15
2
islet of Langerhans
9
1
brain
7
1
subcutaneous abdominal adipose tissue
8
+ See 8 more…
in vitro differentiated cells
adipocyte
14
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
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