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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ATAC-seq
1
ChIP-seq
1
Hi-C
Assay category
6
DNA accessibility
1
3D chromatin structure
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
3
October, 2019
2
August, 2021
1
August, 2017
1
January, 2018
1
July, 2019
Available data
bam
570
bigWig
478
tsv
101
fastq
75
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
8
Homo sapiens
Biosample type
4
in vitro differentiated cells
3
tissue
1
primary cell
Organ
35
liver
22
pancreas
14
epithelium
14
musculature of body
8
connective tissue
4
brain
3
adipose tissue
2
blood vessel
2
vasculature
1
blood
1
bodily fluid
1
embryo
1
heart
Project
8
AMP
Genome assembly (visualization)
8
hg19
Lab
6
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
files.file_type!
bam
BIOSAMPLE
ASSAY
8 results
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ATAC-seq
ChIP-seq
Hi-C
in vitro differentiated cells
adipocyte
3
osteoblast
1
tissue
adipose tissue
2
subcutaneous abdominal adipose tissue
1
primary cell
brain pericyte
1
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