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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
GRO-seq
4
RRBS
2
ChIP-seq
2
WGBS
2
single cell RNA-seq
1
ATAC-seq
1
Hi-C
1
pCHi-C
Assay category
6
DNA methylation
2
DNA binding
2
Transcription
1
3D chromatin structure
1
DNA accessibility
Target of assay
1
broad histone mark
1
histone
1
histone modification
1
transcription factor
Date released
6
August, 2017
5
January, 2018
2
October, 2017
1
August, 2018
1
December, 2018
1
November, 2017
1
November, 2018
1
September, 2018
Available data
bam
2933
bigWig
1689
bed narrowPeak
1496
tsv
1189
fastq
1042
bigBed narrowPeak
322
bed broadPeak
314
tagAlign
285
bigBed broadPeak
273
bed bed3+
161
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
18
Homo sapiens
Biosample type
7
tissue
5
in vitro differentiated cells
3
primary cell
2
cell line
1
stem cell
Organ
4
liver
2
adipose tissue
2
connective tissue
2
musculature of body
1
brain
1
embryo
1
pancreas
Project
169
HPAP
18
AMP
Genome assembly (visualization)
5
hg18
5
hg19
1
GRCh38
Lab
17
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
missing controlled_by
files.file_type!
bam
BIOSAMPLE
ASSAY
18 results
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Clear Filters
GRO-seq
RRBS
ChIP-seq
WGBS
single cell RNA-seq
ATAC-seq
Hi-C
pCHi-C
tissue
liver
1
1
skeletal muscle tissue
2
adipose tissue
1
brain
1
islet of Langerhans
1
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
white fat cell
1
primary cell
pancreatic cell
2
skeletal muscle myoblast
1
cell line
HepG2
1
1
stem cell
hESC
1
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