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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
Assay category
83
DNA binding
Target of assay
73
histone
73
histone modification
43
broad histone mark
30
narrow histone mark
10
control
Date released
66
August, 2017
11
November, 2017
6
October, 2017
Available data
bam
3043
bigWig
1729
bed narrowPeak
1600
tsv
1269
fastq
1027
bigBed narrowPeak
394
tagAlign
320
bed broadPeak
285
bigBed broadPeak
259
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
83
Homo sapiens
Biosample type
69
tissue
14
in vitro differentiated cells
Organ
22
connective tissue
20
liver
17
brain
15
musculature of body
9
pancreas
8
adipose tissue
Project
83
AMP
Genome assembly (visualization)
21
hg19
Lab
83
AMP-T2D consortium
Audit category:
missing controlled_by
files.file_type!
bam
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
tissue
liver
20
skeletal muscle tissue
15
islet of Langerhans
9
subcutaneous abdominal adipose tissue
8
brain
6
+ See 4 more…
in vitro differentiated cells
adipocyte
14
See all biosamples
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