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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
single cell RNA-seq
30
total RNA-seq
20
pCHi-C
3
snDrop-seq
2
RNA microarray
1
ATAC-seq
Assay category
133
Transcription
1
DNA accessibility
Date released
99
August, 2021
25
February, 2020
21
March, 2020
8
February, 2021
4
February, 2023
2
December, 2019
Available data
bam
1732
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
159
Homo sapiens
Biosample type
159
tissue
18
primary cell
15
cell line
4
in vitro differentiated cells
4
stem cell
Organ
98
heart
14
brain
10
blood vessel
10
kidney
10
vasculature
5
eye
4
artery
4
pancreas
3
adipose tissue
3
connective tissue
3
epithelium
3
limb
3
musculature of body
2
intestine
2
liver
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
159
AMP
Genome assembly (visualization)
1
hg19
Lab
158
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
159 results
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single cell RNA-seq
total RNA-seq
pCHi-C
snDrop-seq
RNA microarray
ATAC-seq
tissue
heart left ventricle
18
1
right cardiac atrium
18
1
heart right ventricle
17
1
left cardiac atrium
18
aorta
4
1
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