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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
84
RNA microarray
53
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
84
DNA binding
66
Transcription
4
DNA accessibility
Target of assay
74
histone
74
histone modification
44
broad histone mark
30
narrow histone mark
10
control
Date released
89
February, 2021
66
August, 2017
57
August, 2021
11
November, 2017
7
February, 2023
7
October, 2017
1
May, 2022
1
October, 2022
Available data
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
238
Homo sapiens
Biosample type
221
tissue
17
in vitro differentiated cells
1
cell line
Organ
88
bone element
62
kidney
22
connective tissue
20
liver
18
brain
16
musculature of body
9
pancreas
8
adipose tissue
4
skeleton
Project
239
AMP
Genome assembly (visualization)
25
hg19
Lab
179
AMP-T2D consortium
57
Katalin Susztak, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bam
BIOSAMPLE
ASSAY
239 results
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Clear Filters
ChIP-seq
RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
liver
20
skeletal muscle tissue
15
1
islet of Langerhans
9
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in vitro differentiated cells
adipocyte
14
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
See all biosamples
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