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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ATAC-seq
44
ChIP-seq
Assay category
88
DNA accessibility
44
DNA binding
Target of assay
33
histone
33
histone modification
21
broad histone mark
12
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
80
August, 2021
30
May, 2021
20
May, 2022
2
February, 2023
Available data
270
bigWig
234
bed narrowPeak
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
132
Homo sapiens
Biosample type
84
tissue
30
primary cell
14
cell line
4
in vitro differentiated cells
Organ
64
kidney
34
liver
2
connective tissue
Project
132
AMP
Genome assembly (visualization)
68
hg19
64
GRCh38
Lab
AMP-T2D consortium
64
Katalin Susztak, Upenn
30
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
bam
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
132 results
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ATAC-seq
ChIP-seq
tissue
kidney
64
liver
20
primary cell
CD8-positive, alpha-beta T cell
30
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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