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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
Assay category
74
DNA binding
Target of assay
147
histone
147
histone modification
74
narrow histone mark
73
broad histone mark
29
control
12
transcription factor
5
nucleotide modification
1
RNA binding protein
Date released
36
August, 2017
23
October, 2019
9
November, 2017
2
August, 2021
2
May, 2021
1
April, 2019
1
October, 2017
Available data
375
bigWig
bam
364
bed narrowPeak
149
bigBed narrowPeak
134
tagAlign
110
fastq
29
bed broadPeak
14
bigBed broadPeak
13
bed bed3+
1
tagAlign bed3+
Organism
74
Homo sapiens
Biosample type
66
tissue
4
in vitro differentiated cells
2
cell line
2
primary cell
Organ
16
connective tissue
12
brain
11
adipose tissue
10
liver
7
musculature of body
6
pancreas
4
gonad
4
ovary
2
eye
1
heart
1
limb
1
lymph node
Project
74
AMP
Genome assembly (visualization)
14
hg19
2
GRCh38
Lab
72
AMP-T2D consortium
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
files.file_type!
bam
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
74 results
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ChIP-seq
tissue
islet of Langerhans
27
subcutaneous abdominal adipose tissue
11
liver
8
skeletal muscle tissue
7
cingulate gyrus
4
+ See 8 more…
in vitro differentiated cells
adipocyte
4
cell line
HepG2
2
primary cell
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
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