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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
ChIP-seq
132
ATAC-seq
86
RNA microarray
80
total RNA-seq
68
single cell RNA-seq
25
pCHi-C
22
snATAC-seq
14
Hi-C
11
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
155
DNA accessibility
148
Transcription
145
DNA binding
21
DNA methylation
14
3D chromatin structure
Target of assay
127
histone
127
histone modification
66
narrow histone mark
61
broad histone mark
20
control
2
nucleotide modification
Date released
August, 2021
114
August, 2017
95
February, 2023
93
February, 2021
56
October, 2019
47
September, 2023
42
May, 2022
31
March, 2020
25
February, 2020
19
April, 2020
15
May, 2023
13
July, 2019
13
November, 2017
8
January, 2021
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
May, 2021
1
April, 2019
1
August, 2022
1
November, 2019
Available data
bam
1732
bigWig
977
tsv
880
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
100
txt
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
600
Homo sapiens
Biosample type
601
tissue
479
primary cell
98
in vitro differentiated cells
44
cell line
7
stem cell
Organ
92
bone element
74
pancreas
73
kidney
73
liver
53
eye
49
heart
48
connective tissue
47
adipose tissue
40
blood vessel
40
vasculature
39
brain
38
musculature of body
37
artery
20
lung
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
506
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
106
hg19
52
GRCh38
Lab
444
AMP-T2D consortium
47
KPMP
40
Karen Mohlke, UNC
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bam
month_released!
August, 2021
BIOSAMPLE
ASSAY
601 results
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ChIP-seq
ATAC-seq
RNA microarray
total RNA-seq
single cell RNA-seq
pCHi-C
snATAC-seq
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
41
30
25
4
7
2
1
4
bone element
84
liver
23
20
20
1
1
1
1
3
kidney
11
56
1
subcutaneous abdominal adipose tissue
36
3
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