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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
21
total RNA-seq
20
ATAC-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
1
DNase-seq
1
single cell RNA-seq
Assay category
24
DNA binding
22
Transcription
21
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
3
control
1
transcription factor
Date released
40
May, 2022
August, 2021
28
August, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
May, 2020
1
November, 2017
Available data
bam
605
bigWig
465
fastq
424
bed narrowPeak
358
bigBed narrowPeak
165
tsv
82
tagAlign
63
bed broadPeak
63
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
79
Homo sapiens
Biosample type
73
tissue
4
cell line
2
primary cell
Organ
253
pancreas
205
epithelium
93
bone element
86
connective tissue
80
kidney
79
liver
54
eye
50
heart
48
adipose tissue
45
vasculature
44
blood vessel
43
brain
39
musculature of body
37
artery
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
25
hg19
Lab
40
Karen Mohlke, UNC
39
AMP-T2D consortium
files.file_type!
bam
month_released!
August, 2021
BIOSAMPLE
ASSAY
79 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
DNase-seq
single cell RNA-seq
tissue
liver
23
20
20
3
1
1
1
1
right lobe of liver
1
1
1
cell line
HepG2
1
1
2
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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