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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ATAC-seq
185
ChIP-seq
130
total RNA-seq
121
single cell RNA-seq
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
10
WGBS
4
MeRIP-seq
3
RNA microarray
1
DNase-seq
Assay category
251
Transcription
225
DNA accessibility
185
DNA binding
21
DNA methylation
16
3D chromatin structure
Target of assay
162
histone
162
histone modification
81
broad histone mark
81
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
229
August, 2021
114
August, 2017
95
February, 2023
February, 2021
56
October, 2019
42
May, 2022
40
May, 2024
31
March, 2020
25
February, 2020
19
April, 2020
15
May, 2023
13
July, 2019
13
November, 2017
8
January, 2021
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
May, 2021
1
April, 2019
1
August, 2022
1
November, 2019
Available data
bam
1328
bigWig
976
bed narrowPeak
624
tsv
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
728
Homo sapiens
Biosample type
730
tissue
434
primary cell
99
in vitro differentiated cells
79
cell line
7
stem cell
Organ
181
heart
146
kidney
76
pancreas
72
liver
53
eye
49
connective tissue
48
adipose tissue
46
blood vessel
46
vasculature
39
artery
39
brain
38
musculature of body
20
lung
15
epithelium
8
bone element
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
682
AMP
29
T1D
19
LungMap
Genome assembly (visualization)
156
GRCh38
107
hg19
Lab
450
AMP-T2D consortium
142
Katalin Susztak, Upenn
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
audit script error
3
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bam
month_released!
February, 2021
lab.title!
KPMP
BIOSAMPLE
ASSAY
730 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
RNA microarray
DNase-seq
tissue
kidney
75
49
12
6
1
1
islet of Langerhans
30
41
26
7
4
3
1
4
liver
20
23
20
1
1
1
3
left cardiac atrium
40
18
subcutaneous abdominal adipose tissue
36
3
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