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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
12
total RNA-seq
8
snATAC-seq
3
ATAC-seq
3
Hi-C
2
RRBS
2
pCHi-C
Assay category
22
DNA binding
12
Transcription
11
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
1
control
Date released
13
November, 2017
12
February, 2020
8
January, 2021
7
October, 2017
5
July, 2019
3
October, 2019
2
March, 2020
1
February, 2023
1
January, 2018
Available data
bam
277
bigWig
257
bed narrowPeak
181
bigBed narrowPeak
118
tagAlign
81
fastq
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
52
Homo sapiens
Biosample type
39
tissue
12
primary cell
1
cell line
Organ
251
pancreas
202
kidney
201
epithelium
182
heart
108
liver
87
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
9
bone element
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
44
AMP
8
T1D
Genome assembly (visualization)
10
hg19
2
GRCh38
Lab
44
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bam
month_released!
February, 2021
BIOSAMPLE
ASSAY
52 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
tissue
brain
7
1
1
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
1
Ammon's horn
1
1
+ See 15 more…
primary cell
peripheral blood mononuclear cell
8
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
cell line
GM12878
1
See all biosamples
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