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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
30
total RNA-seq
20
ATAC-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
42
DNA binding
31
Transcription
21
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
23
histone
23
histone modification
13
broad histone mark
12
transcription factor
10
narrow histone mark
7
control
1
RNA binding protein
Date released
40
May, 2022
31
August, 2021
28
August, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
May, 2020
1
November, 2017
Available data
bam
616
bigWig
465
fastq
435
bed narrowPeak
358
bigBed narrowPeak
173
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
110
Homo sapiens
Biosample type
73
tissue
35
cell line
2
primary cell
Organ
253
pancreas
208
kidney
204
epithelium
181
heart
110
liver
93
bone element
86
connective tissue
50
vasculature
49
blood vessel
47
adipose tissue
40
brain
39
artery
38
musculature of body
33
eye
20
lung
8
blood
8
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
1
vein
Project
110
AMP
Genome assembly (visualization)
40
hg19
Lab
40
Karen Mohlke, UNC
39
AMP-T2D consortium
31
Bing Ren, UCSD
files.file_type!
bam
month_released!
January, 2018
October, 2019
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
23
20
20
1
3
1
1
1
right lobe of liver
1
1
1
cell line
HepG2
19
9
2
2
2
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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