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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
4
ATAC-seq
2
Capture-C
1
pCHi-C
1
snATAC-seq
Assay category
5
3D chromatin structure
5
DNA accessibility
Date released
4
February, 2023
4
July, 2019
2
August, 2021
May, 2021
1
February, 2021
1
May, 2022
1
October, 2019
Available data
bam
2866
bigWig
1684
bed narrowPeak
1427
tsv
1358
fastq
1042
bigBed narrowPeak
322
bed broadPeak
308
tagAlign
285
bigBed broadPeak
271
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
13
Homo sapiens
Biosample type
6
in vitro differentiated cells
4
primary cell
2
cell line
1
tissue
Organ
7
connective tissue
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
musculature of body
1
pancreas
Project
13
AMP
Genome assembly (visualization)
13
hg19
1
GRCh38
Lab
11
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bam
month_released!
January, 2021
May, 2021
BIOSAMPLE
ASSAY
13 results
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Clear Filters
Hi-C
ATAC-seq
Capture-C
pCHi-C
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
HepG2
1
Panc1
1
tissue
skeletal muscle tissue
1
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