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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
35
ATAC-seq
25
ChIP-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
96
Transcription
35
DNA accessibility
25
DNA binding
4
DNA methylation
3
3D chromatin structure
Target of assay
36
histone
36
histone modification
20
broad histone mark
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
36
February, 2023
25
May, 2024
5
March, 2020
4
July, 2019
3
February, 2020
1
October, 2019
Available data
bam
184
bigWig
168
tsv
151
bed narrowPeak
72
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
166
Homo sapiens
Biosample type
165
tissue
1
primary cell
Organ
243
pancreas
210
kidney
207
epithelium
166
heart
100
liver
93
bone element
75
connective tissue
52
eye
51
vasculature
50
blood vessel
39
artery
38
adipose tissue
32
musculature of body
31
brain
20
lung
8
skeleton
7
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
blood
1
bodily fluid
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
166
AMP
Genome assembly (visualization)
60
GRCh38
5
hg19
Lab
141
AMP-T2D consortium
25
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
files.file_type!
bam
month_released!
January, 2021
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
166 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
left cardiac atrium
18
25
coronary artery
35
1
heart left ventricle
18
1
1
1
2
heart right ventricle
17
1
1
right cardiac atrium
18
1
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primary cell
cardiac fibroblast
1
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