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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
35
ATAC-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
1
ChIP-seq
Assay category
96
Transcription
35
DNA accessibility
3
3D chromatin structure
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
92
August, 2021
36
February, 2023
5
March, 2020
July, 2019
3
February, 2020
1
April, 2019
1
October, 2019
Available data
bam
163
bigWig
157
tsv
147
bed narrowPeak
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
138
Homo sapiens
Biosample type
138
tissue
Organ
255
pancreas
206
kidney
199
epithelium
138
heart
107
liver
93
bone element
89
connective tissue
53
eye
49
adipose tissue
48
blood vessel
48
vasculature
39
artery
38
brain
34
musculature of body
20
lung
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
4
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
138
AMP
Genome assembly (visualization)
35
GRCh38
4
hg19
Lab
138
AMP-T2D consortium
files.file_type!
bam
month_released!
July, 2019
BIOSAMPLE
ASSAY
138 results
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single cell RNA-seq
ATAC-seq
Hi-C
pCHi-C
total RNA-seq
ChIP-seq
tissue
coronary artery
35
1
heart left ventricle
18
1
1
1
heart right ventricle
17
1
1
right cardiac atrium
18
1
left cardiac atrium
18
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