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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
5
RRBS
4
Hi-C
2
total RNA-seq
1
ATAC-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
22
DNA binding
5
DNA methylation
4
3D chromatin structure
3
Transcription
2
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
3
control
Date released
26
August, 2017
5
July, 2019
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
66
bigWig
60
bed narrowPeak
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
36
Homo sapiens
Biosample type
35
tissue
1
primary cell
Organ
249
pancreas
208
kidney
204
epithelium
137
heart
108
liver
93
bone element
89
connective tissue
54
eye
48
adipose tissue
48
vasculature
47
blood vessel
41
brain
39
artery
36
musculature of body
19
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
4
gonad
4
ovary
1
bone marrow
1
embryo
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
1
vein
Project
36
AMP
Genome assembly (visualization)
18
hg19
Lab
36
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
month_released!
March, 2020
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
RRBS
Hi-C
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
gastrocnemius medialis
4
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
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