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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
snATAC-seq
11
ATAC-seq
5
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
29
DNA accessibility
5
Transcription
Date released
May, 2021
23
February, 2023
16
January, 2021
Available data
bam
45
bigWig
45
tsv
24
fastq
18
bed narrowPeak
6
txt
Organism
39
Homo sapiens
Biosample type
26
tissue
8
primary cell
5
cell line
Organ
26
pancreas
8
blood
8
bodily fluid
Project
39
T1D
Lab
703
AMP-T2D consortium
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
39
Kyle Gaulton, UCSD
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
files.file_type!
bam
month_released!
May, 2021
BIOSAMPLE
ASSAY
39 results
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snATAC-seq
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
6
11
5
pancreas
4
primary cell
peripheral blood mononuclear cell
8
cell line
EndoC_BH1
3
2
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