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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
4
WGBS
3
total RNA-seq
2
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
36
DNA binding
4
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
40
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
October, 2019
Available data
bam
424
bigWig
401
tsv
44
fastq
13
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
47
Homo sapiens
Biosample type
47
tissue
1
in vitro differentiated cells
Organ
253
pancreas
208
kidney
204
epithelium
141
heart
110
liver
93
bone element
87
connective tissue
50
vasculature
49
blood vessel
48
adipose tissue
40
brain
39
artery
39
musculature of body
33
eye
20
lung
9
blood
9
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
1
vein
Project
48
AMP
Genome assembly (visualization)
4
hg19
1
GRCh38
Lab
48
AMP-T2D consortium
files.file_type!
bam
month_released!
October, 2019
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
WGBS
total RNA-seq
ATAC-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
1
1
2
1
subcutaneous adipose tissue
1
1
omental fat pad
1
in vitro differentiated cells
white fat cell
1
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