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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
97
total RNA-seq
86
single cell RNA-seq
56
snATAC-seq
47
WGBS
37
ChIP-seq
20
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
Assay category
185
Transcription
174
DNA accessibility
58
DNA methylation
37
DNA binding
10
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
57
May, 2021
45
February, 2021
13
July, 2019
8
January, 2021
7
August, 2020
5
March, 2020
3
March, 2023
3
October, 2019
3
October, 2022
1
August, 2017
1
January, 2018
1
November, 2018
September, 2018
Available data
544
bigWig
bam
340
fastq
251
bed narrowPeak
248
tsv
153
zippedFastqFolder
100
tagAlign
95
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
40
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
csv
1
tar
Organism
483
Homo sapiens
Biosample type
870
tissue
478
primary cell
103
in vitro differentiated cells
80
cell line
7
stem cell
Organ
164
epithelium
152
pancreas
8
blood
8
bodily fluid
5
kidney
5
vasculature
4
blood vessel
4
brain
4
connective tissue
2
liver
2
vein
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
324
HPAP
134
AMP
24
T1D
2
community
1
ITG
Genome assembly (visualization)
54
hg19
11
GRCh38
1
hg18
Lab
324
Klaus Kaestner, Upenn
99
AMP-T2D consortium
59
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
31
audit script error
10
inconsistent ontology term
files.file_type!
bam
month_released!
September, 2018
BIOSAMPLE
ASSAY
485 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
RRBS
DNase-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
GRO-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
+ See 40 more…
stem cell
SB Ad3.1
1
1
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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