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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
97
total RNA-seq
86
single cell RNA-seq
56
snATAC-seq
47
WGBS
37
ChIP-seq
15
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
1
DNAme array
Assay category
183
Transcription
174
DNA accessibility
58
DNA methylation
37
DNA binding
10
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
56
May, 2021
45
February, 2021
13
July, 2019
8
January, 2021
7
August, 2020
3
October, 2019
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
September, 2018
Available data
541
bigWig
bam
336
fastq
249
bed narrowPeak
244
tsv
153
zippedFastqFolder
100
tagAlign
95
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
csv
1
tar
Organism
477
Homo sapiens
Biosample type
870
tissue
477
primary cell
103
in vitro differentiated cells
80
cell line
7
stem cell
Organ
164
epithelium
152
pancreas
8
blood
8
bodily fluid
5
kidney
5
vasculature
4
blood vessel
4
brain
3
connective tissue
2
liver
2
vein
1
bone element
bone marrow
1
eye
1
heart
1
musculature of body
Project
324
HPAP
129
AMP
23
T1D
1
ITG
Genome assembly (visualization)
54
hg19
11
GRCh38
Lab
324
Klaus Kaestner, Upenn
94
AMP-T2D consortium
58
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
9
inconsistent ontology term
files.file_type!
bam
month_released!
September, 2018
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
477 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
1
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