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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ATAC-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
20
total RNA-seq
7
ChIP-seq
Assay category
82
DNA accessibility
54
Transcription
41
DNA methylation
7
DNA binding
Target of assay
6
histone
6
histone modification
5
broad histone mark
1
control
1
narrow histone mark
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
134
zippedFastqFolder
50
bed narrowPeak
41
fastq
bam
34
bigWig
14
tagAlign
7
txt
6
bigBed narrowPeak
4
bed broadPeak
1
bed bed3+
Organism
184
Homo sapiens
Biosample type
134
primary cell
50
tissue
Organ
81
pancreas
80
epithelium
40
liver
7
brain
2
musculature of body
Project
134
HPAP
50
AMP
Genome assembly (visualization)
22
hg19
1
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
9
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bam
month_released!
September, 2020
BIOSAMPLE
ASSAY
184 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
total RNA-seq
ChIP-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
brain
7
skeletal muscle tissue
1
1
islet of Langerhans
1
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