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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
15
RRBS
9
WGBS
8
Hi-C
4
ATAC-seq
3
snDrop-seq
1
pCHi-C
Assay category
31
DNA accessibility
24
DNA methylation
18
Transcription
8
3D chromatin structure
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
bam
636
bigWig
624
tsv
89
txt
45
fastq
30
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
8
tagAlign
6
bed bed3+
6
csv
4
bed bedgraph
4
hdf5
2
bed bed3
2
bigBed narrowPeak
Organism
169
Homo sapiens
Biosample type
106
tissue
58
primary cell
4
in vitro differentiated cells
1
cell line
Organ
84
bone element
14
epithelium
12
kidney
8
pancreas
6
connective tissue
5
brain
5
liver
5
musculature of body
4
heart
4
limb
3
vasculature
2
blood vessel
1
eye
1
pericardium
Project
124
AMP
45
HPAP
Genome assembly (visualization)
24
hg19
Lab
124
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
86
inconsistent ontology term
32
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
169 results
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Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
1
gastrocnemius medialis
4
heart left ventricle
1
2
brain
1
+ See 8 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 10 more…
in vitro differentiated cells
adipocyte
4
cell line
HepG2
1
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