Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
40
single cell RNA-seq
25
total RNA-seq
24
ATAC-seq
17
pCHi-C
1
DNAme array
Assay category
74
DNA binding
65
Transcription
24
DNA accessibility
1
DNA methylation
Target of assay
54
histone
54
histone modification
32
broad histone mark
22
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
306
bigWig
bam
173
tsv
133
bed narrowPeak
90
tagAlign
41
fastq
19
zippedFastqFolder
2
bed bed3+
Organism
181
Homo sapiens
Biosample type
116
primary cell
47
in vitro differentiated cells
16
cell line
2
tissue
Organ
36
pancreas
35
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
105
AMP
59
HPAP
17
T1D
Genome assembly (visualization)
40
hg19
3
GRCh38
Lab
100
Kyle Gaulton, UCSD
59
Klaus Kaestner, Upenn
22
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
181 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
Langerhans cell
40
CD8-positive, alpha-beta T cell
33
2
1
pancreatic alpha cell
15
2
monocyte
1
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
+ See 13 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC_BH1
16
tissue
pancreas
1
thymus
1
See all biosamples
Download