Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
353
ATAC-seq
263
single cell RNA-seq
257
ChIP-seq
242
total RNA-seq
86
RNA microarray
84
snATAC-seq
54
pCHi-C
53
WGBS
34
Hi-C
21
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
53
DNA methylation
Date released
41
May, 2022
6
February, 2021
3
August, 2017
3
July, 2019
Available data
41
zippedFastqFolder
bam
15
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
14
fastq
6
tsv
Organism
53
Homo sapiens
Biosample type
47
primary cell
6
tissue
Organ
47
epithelium
47
pancreas
adipose tissue
4
connective tissue
4
liver
2
heart
Project
47
HPAP
6
AMP
Lab
47
Klaus Kaestner, Upenn
6
AMP-T2D consortium
files.file_type!
bam
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
53 results
search-icon
table-tab-icon
Clear Filters
WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
liver
3
heart left ventricle
2
right lobe of liver
1
Download