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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
5
MeRIP-seq
Assay category
27
DNA binding
Target of assay
201
histone
201
histone modification
103
broad histone mark
98
narrow histone mark
32
control
29
transcription factor
11
RNA binding protein
5
nucleotide modification
Date released
14
August, 2017
8
May, 2021
5
November, 2020
4
August, 2021
1
October, 2017
Available data
bam
149
fastq
67
tagAlign
23
bigWig
9
bed bed3+
3
tsv
Organism
32
Homo sapiens
Biosample type
15
tissue
7
cell line
7
in vitro differentiated cells
3
primary cell
Organ
11
pancreas
7
connective tissue
7
liver
adipose tissue
3
epithelium
3
musculature of body
1
brain
Project
32
AMP
Genome assembly (visualization)
3
hg19
Lab
15
AMP-T2D consortium
8
Kyle Gaulton, UCSD
5
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
bam
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
32 results
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Clear Filters
ChIP-seq
MeRIP-seq
tissue
islet of Langerhans
6
2
liver
3
skeletal muscle tissue
3
brain
1
cell line
HepG2
4
EndoC_BH1
3
in vitro differentiated cells
embryonic stem cell
5
adipocyte
2
primary cell
CD8-positive, alpha-beta T cell
3
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