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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
Assay category
98
DNA binding
Target of assay
201
histone
201
histone modification
103
broad histone mark
98
narrow histone mark
32
control
29
transcription factor
11
RNA binding protein
5
nucleotide modification
Date released
25
August, 2017
23
October, 2019
22
May, 2021
15
May, 2024
9
November, 2017
2
August, 2021
1
April, 2019
1
October, 2017
Available data
438
bigWig
427
bed narrowPeak
bam
171
tagAlign
148
bigBed narrowPeak
109
fastq
28
bed broadPeak
14
bigBed broadPeak
13
bed bed3+
1
tagAlign bed3+
Organism
98
Homo sapiens
Biosample type
70
tissue
14
in vitro differentiated cells
12
primary cell
2
cell line
Organ
16
connective tissue
16
heart
12
brain
adipose tissue
10
liver
7
musculature of body
6
pancreas
4
gonad
4
ovary
2
eye
1
limb
1
lymph node
Project
98
AMP
Genome assembly (visualization)
23
hg19
17
GRCh38
Lab
61
AMP-T2D consortium
20
Kyle Gaulton, UCSD
15
Patrick T. Ellinor, Broad
2
Bing Ren, UCSD
files.file_type!
bam
organ_slims!
adipose tissue
organ_slims!!
adipose tissue
BIOSAMPLE
ASSAY
98 results
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ChIP-seq
tissue
islet of Langerhans
27
left cardiac atrium
15
liver
8
skeletal muscle tissue
7
cingulate gyrus
4
+ See 8 more…
in vitro differentiated cells
embryonic stem cell
10
adipocyte
4
primary cell
CD8-positive, alpha-beta T cell
10
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
cell line
HepG2
2
See all biosamples
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