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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ATAC-seq
181
ChIP-seq
174
single cell RNA-seq
129
total RNA-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
14
Hi-C
11
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
303
Transcription
224
DNA accessibility
181
DNA binding
21
DNA methylation
14
3D chromatin structure
Target of assay
158
histone
158
histone modification
81
broad histone mark
77
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
227
August, 2021
114
August, 2017
95
February, 2023
93
February, 2021
52
October, 2019
47
September, 2023
42
May, 2022
40
May, 2024
30
March, 2020
25
February, 2020
19
April, 2020
15
May, 2023
13
July, 2019
13
November, 2017
8
January, 2021
8
October, 2017
4
July, 2018
4
November, 2020
3
December, 2019
2
January, 2018
2
March, 2019
2
May, 2021
1
April, 2019
1
August, 2022
1
November, 2019
Available data
bam
1772
bigWig
1074
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
859
Homo sapiens
Biosample type
861
tissue
479
primary cell
103
in vitro differentiated cells
46
cell line
7
stem cell
Organ
201
kidney
181
heart
92
bone element
73
liver
72
pancreas
53
eye
49
connective tissue
48
adipose tissue
46
blood vessel
46
vasculature
39
artery
39
brain
38
musculature of body
20
lung
15
epithelium
8
limb
8
skeleton
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
766
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
155
GRCh38
105
hg19
Lab
538
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bam
organ_slims!
gonad
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
861 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
75
64
49
6
1
1
islet of Langerhans
29
37
25
7
4
1
1
4
bone element
84
liver
20
23
1
20
1
1
1
3
left cardiac atrium
40
18
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