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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ATAC-seq
6
MeRIP-seq
6
RRBS
5
Hi-C
2
Capture-C
2
DNase-seq
2
total RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
32
DNA accessibility
6
DNA methylation
5
3D chromatin structure
2
Transcription
Target of assay
3
control
3
nucleotide modification
Date released
16
May, 2021
15
February, 2023
8
July, 2019
6
November, 2020
3
March, 2020
3
October, 2019
2
August, 2021
1
December, 2019
1
November, 2019
Available data
bam
287
bigWig
188
fastq
149
bed narrowPeak
148
tsv
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
3
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
54
Homo sapiens
Biosample type
28
cell line
15
tissue
12
primary cell
Organ
182
heart
163
kidney
110
liver
92
bone element
90
connective tissue
77
pancreas
55
epithelium
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
8
limb
8
skeleton
5
gonad
5
ovary
intestine
2
vein
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
152
HPAP
55
AMP
Genome assembly (visualization)
25
hg19
Lab
49
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
2
audit script error
files.file_type!
bam
organ_slims!
intestine
BIOSAMPLE
ASSAY
55 results
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ATAC-seq
MeRIP-seq
RRBS
Hi-C
Capture-C
DNase-seq
total RNA-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
cell line
EndoC_BH1
18
6
1
2
1
tissue
pigmented layer of retina
12
2
renal glomerulus
1
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
epithelial cell of proximal tubule
1
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