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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
66
ATAC-seq
50
total RNA-seq
6
snATAC-seq
4
Capture-C
3
STARR-seq
2
Hi-C
1
ChIP-seq
1
RNA microarray
Assay category
156
Transcription
72
DNA accessibility
2
3D chromatin structure
1
DNA binding
Target of assay
1
broad histone mark
1
histone
1
histone modification
Date released
239
August, 2021
205
February, 2023
141
February, 2021
136
May, 2022
122
May, 2021
101
August, 2017
64
October, 2019
59
September, 2020
57
May, 2020
47
September, 2023
46
March, 2020
24
February, 2020
23
July, 2019
19
April, 2020
16
January, 2021
15
May, 2023
13
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
November, 2018
1
September, 2018
Available data
114
tsv
89
bed narrowPeak
64
xls
57
txt
bam
30
bigWig
20
tagAlign
2
bed bed3+
1
bedpe bed3+
1
hic
Organism
238
Homo sapiens
Biosample type
229
tissue
5
cell line
5
in vitro differentiated cells
Organ
130
kidney
92
heart
liver
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
239
AMP
Genome assembly (visualization)
64
GRCh38
5
hg19
Lab
128
Katalin Susztak, Upenn
102
AMP-T2D consortium
5
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bam
organ_slims!
liver
BIOSAMPLE
ASSAY
239 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
Capture-C
STARR-seq
Hi-C
ChIP-seq
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
neural progenitor cell
1
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