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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
25
ATAC-seq
9
total RNA-seq
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
pCHi-C
Assay category
52
DNA binding
25
DNA accessibility
11
Transcription
2
3D chromatin structure
Target of assay
33
histone
33
histone modification
19
broad histone mark
14
narrow histone mark
12
transcription factor
7
control
5
RNA binding protein
Date released
47
May, 2021
16
February, 2023
14
August, 2017
March, 2020
5
August, 2021
4
February, 2021
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
bam
257
bigWig
141
fastq
132
bed narrowPeak
127
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
3
bedpe bed3+
3
txt
2
hic
1
bed broadPeak
1
bigBed broadPeak
Organism
97
Homo sapiens
Biosample type
838
tissue
478
primary cell
97
in vitro differentiated cells
74
cell line
3
stem cell
Organ
38
connective tissue
1
adipose tissue
1
embryo
Project
97
AMP
Genome assembly (visualization)
29
hg19
4
hg18
Lab
47
Kyle Gaulton, UCSD
43
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
9
inconsistent ontology term
2
audit script error
files.file_type!
bam
organ_slims!
nerve
month_released!
March, 2020
BIOSAMPLE
ASSAY
97 results
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ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
pCHi-C
in vitro differentiated cells
embryonic stem cell
37
6
5
adipocyte
14
8
1
1
chondrocyte
5
immature adipocyte
2
2
cardiomyocytes (cardiac muscle cell)
1
2
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