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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
4
WGBS
3
ATAC-seq
3
total RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
36
DNA binding
4
DNA methylation
3
DNA accessibility
3
Transcription
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
40
August, 2017
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
October, 2019
Available data
bam
425
bigWig
401
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
bedpe bed3+
Organism
47
Homo sapiens
Biosample type
48
tissue
Organ
250
pancreas
210
kidney
202
epithelium
139
heart
108
liver
93
bone element
90
connective tissue
54
eye
49
vasculature
48
adipose tissue
48
blood vessel
43
brain
39
artery
37
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
1
vein
Project
48
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
48
AMP-T2D consortium
files.file_type!
bam
bedpe bed3+
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
WGBS
ATAC-seq
total RNA-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
1
3
1
1
subcutaneous adipose tissue
1
1
omental fat pad
1
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