Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
3
ATAC-seq
3
WGBS
3
total RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
36
DNA binding
3
DNA accessibility
3
DNA methylation
3
Transcription
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
39
August, 2017
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
October, 2019
Available data
bam
425
bigWig
401
tsv
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
46
Homo sapiens
Biosample type
47
tissue
Organ
210
kidney
187
pancreas
142
heart
138
epithelium
106
liver
93
bone element
89
connective tissue
54
eye
51
vasculature
50
blood vessel
47
adipose tissue
42
brain
39
artery
37
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
47
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
47
AMP-T2D consortium
files.file_type!
bam
fastq
BIOSAMPLE
ASSAY
47 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
WGBS
total RNA-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
3
1
1
subcutaneous adipose tissue
1
1
omental fat pad
1
Download