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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
12
total RNA-seq
3
pCHi-C
2
ATAC-seq
Assay category
22
DNA binding
12
Transcription
2
DNA accessibility
Target of assay
21
histone
21
histone modification
12
narrow histone mark
9
broad histone mark
1
control
Date released
13
November, 2017
12
February, 2020
7
October, 2017
July, 2019
3
March, 2020
3
October, 2019
1
February, 2023
Available data
bam
206
bigWig
202
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
21
fastq
16
tsv
1
bed bed3
1
tagAlign bed3+
Organism
39
Homo sapiens
Biosample type
39
tissue
Organ
255
pancreas
206
kidney
199
epithelium
178
heart
107
liver
93
bone element
89
connective tissue
53
eye
49
adipose tissue
48
blood vessel
48
vasculature
39
artery
38
brain
34
musculature of body
20
lung
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
4
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
39
AMP
Genome assembly (visualization)
4
hg19
2
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bam
month_released!
July, 2019
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
tissue
brain
7
1
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
1
Ammon's horn
1
1
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