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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
8
ATAC-seq
4
WGBS
3
pCHi-C
3
total RNA-seq
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
51
DNA binding
8
DNA accessibility
5
DNA methylation
3
Transcription
1
3D chromatin structure
Target of assay
44
histone
44
histone modification
28
broad histone mark
16
narrow histone mark
7
control
Date released
54
August, 2017
February, 2023
4
February, 2021
4
October, 2019
2
February, 2020
2
July, 2019
2
March, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
May, 2023
Available data
bam
568
bigWig
478
tsv
101
fastq
72
bed narrowPeak
28
bigBed narrowPeak
22
tagAlign
21
bed bed3+
10
bed broadPeak
9
bigBed broadPeak
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
hdf5
Organism
71
Homo sapiens
Biosample type
48
tissue
21
in vitro differentiated cells
2
primary cell
1
stem cell
Organ
106
heart
84
bone element
72
connective tissue
60
pancreas
48
adipose tissue
42
brain
39
liver
39
musculature of body
34
epithelium
23
eye
19
kidney
16
vasculature
15
blood vessel
8
limb
5
gonad
5
ovary
4
artery
2
intestine
2
vein
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
72
AMP
Genome assembly (visualization)
12
hg19
1
GRCh38
Lab
72
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
files.file_type!
bam
month_released!
February, 2023
BIOSAMPLE
ASSAY
72 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
pCHi-C
total RNA-seq
Hi-C
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
2
1
1
1
subcutaneous adipose tissue
1
1
islet of Langerhans
1
omental fat pad
1
in vitro differentiated cells
adipocyte
14
6
white fat cell
1
primary cell
brain pericyte
1
cardiac fibroblast
1
stem cell
mesenchymal stem cell
1
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