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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
10
ATAC-seq
4
WGBS
4
pCHi-C
3
total RNA-seq
2
Capture-C
1
RNA microarray
Assay category
51
DNA binding
10
DNA accessibility
4
DNA methylation
3
Transcription
Target of assay
44
histone
44
histone modification
28
broad histone mark
16
narrow histone mark
7
control
Date released
54
August, 2017
February, 2023
5
August, 2021
4
February, 2021
4
October, 2019
2
February, 2020
July, 2019
2
March, 2020
1
August, 2018
1
January, 2018
1
May, 2021
1
May, 2023
Available data
bam
553
bigWig
462
tsv
101
fastq
74
bed narrowPeak
28
bigBed narrowPeak
22
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
4
bed bedgraph
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
Organism
74
Homo sapiens
Biosample type
48
tissue
25
in vitro differentiated cells
1
primary cell
1
stem cell
Organ
206
kidney
199
pancreas
147
epithelium
142
heart
107
liver
85
bone element
75
connective tissue
48
adipose tissue
37
brain
34
musculature of body
22
eye
20
lung
13
blood vessel
13
vasculature
9
blood
9
bodily fluid
5
gonad
5
ovary
4
artery
4
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
74
AMP
1
T1D
Genome assembly (visualization)
14
hg19
1
GRCh38
Lab
70
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
bam
month_released!
February, 2023
July, 2019
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
ATAC-seq
WGBS
pCHi-C
total RNA-seq
Capture-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
2
1
1
1
subcutaneous adipose tissue
1
1
islet of Langerhans
1
omental fat pad
1
in vitro differentiated cells
adipocyte
14
7
1
osteoblast
1
1
white fat cell
1
primary cell
adult endothelial progenitor cell
1
stem cell
mesenchymal stem cell
1
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